You won't be able to use cannery bags in some Foodsavers because the heat strip is too short in some models for the bag width. In that case, however, you could cut the bag in half or just thinner and heat seal the cut edges to create a smaller bag, then proceed to vacuum the top. Note: models that require the ends of the bag to be inserted into a slot for vacuuming and sealing may not work at all, you'd have to try and see.
Foodsavers are also good for resealing your mylar bags once they are opened. For example, if you have a bag of oatmeal you plan to go through within the month, just heat seal it closed (forget vacuuming) so you can throw it back in the freezer(or wherever you store it) without it spilling out. Another option is to open the contents of your mylar bags and pour them into empty #10 cans for convenient opening and closing.
Another tip for sealing Mylar bags, whether with and O2 absorber or without, is to use a flat iron (for hair). It easily seals if you slide the tool along the opening slowly but continuously; you just have to use a steady hand. I’ve had great success with this method!